Index

A

analysis_group (pytim.gitim.GITIM property) (pytim.itim.ITIM property) (pytim.sasa.SASA property) (pytim.simple_interface.SimpleInterface property) (pytim.willard_chandler.WillardChandler property)

autoassign (pytim.gitim.GITIM property) (pytim.itim.ITIM property) (pytim.sasa.SASA property) (pytim.simple_interface.SimpleInterface property) (pytim.willard_chandler.WillardChandler property)

C

Charge (class in pytim.observables) circle() (pytim.observables.ContactAngle static method) compute() (pytim.observables.Charge method) (pytim.observables.Force method) (pytim.observables.FreeVolume method) (pytim.observables.IntrinsicDistance method) (pytim.observables.LocalReferenceFrame method) (pytim.observables.Mass method) (pytim.observables.Number method) (pytim.observables.NumberOfResidues method) (pytim.observables.Orientation method) (pytim.observables.Position method) (pytim.observables.Velocity method)

compute_profile() (pytim.observables.FreeVolume method) contact_angle (pytim.observables.ContactAngle property) contact_angles (pytim.observables.ContactAngle property) ContactAngle (class in pytim.observables) correlate() (in module pytim.utilities) correlation() (pytim.observables.Correlator method) Correlator (class in pytim.observables)

D

density() (pytim.willard_chandler.Writevtk method)

DistributionFunction (class in pytim.observables)

E

ellipse() (pytim.observables.ContactAngle static method)

ellipsoid() (pytim.observables.ContactAngle static method)

F

fit_circle() (pytim.observables.ContactAngle method) fit_ellipse() (pytim.observables.ContactAngle method)

fit_ellipsoid() (pytim.observables.ContactAngle method) Force (class in pytim.observables) FreeVolume (class in pytim.observables)

G

generate_cube_vertices() (in module pytim.utilities)

GITIM (class in pytim.gitim) guess_normal() (in module pytim.utilities)

I

include_zero_radius (pytim.gitim.GITIM property) (pytim.itim.ITIM property) (pytim.sasa.SASA property) (pytim.simple_interface.SimpleInterface property) (pytim.willard_chandler.WillardChandler property) IntrinsicDistance (class in pytim.observables)

is_buried() (pytim.gitim.GITIM method) (pytim.itim.ITIM method) (pytim.sasa.SASA method) (pytim.simple_interface.SimpleInterface method) (pytim.willard_chandler.WillardChandler method) ITIM (class in pytim.itim)

L

label_planar_sides() (pytim.gitim.GITIM method) (pytim.itim.ITIM method) (pytim.sasa.SASA method) (pytim.simple_interface.SimpleInterface method) (pytim.willard_chandler.WillardChandler method) lap() (in module pytim.utilities)

layers (pytim.gitim.GITIM property) (pytim.itim.ITIM property) (pytim.sasa.SASA property) (pytim.simple_interface.SimpleInterface property) (pytim.willard_chandler.WillardChandler property) LayerTriangulation (class in pytim.observables) LocalReferenceFrame (class in pytim.observables)

M

Mass (class in pytim.observables) mean_contact_angle (pytim.observables.ContactAngle property) mean_contact_angles (pytim.observables.ContactAngle property) module pytim.datafiles pytim.gitim pytim.itim pytim.observables.profile pytim.observables.rdf pytim.observables.rdf2d pytim.sasa pytim.simple_interface pytim.utilities pytim.willard_chandler

N

Number (class in pytim.observables)

NumberOfResidues (class in pytim.observables)

O

oldRDF (class in pytim.observables.rdf)

Orientation (class in pytim.observables)

P

particles() (pytim.willard_chandler.Writevtk method) Position (class in pytim.observables) prepare_box() (pytim.gitim.GITIM method) (pytim.itim.ITIM method) (pytim.sasa.SASA method) (pytim.simple_interface.SimpleInterface method) (pytim.willard_chandler.WillardChandler method) Profile (class in pytim.observables.profile) pytim.datafiles module pytim.gitim module pytim.itim module

pytim.observables.profile module pytim.observables.rdf module pytim.observables.rdf2d module pytim.sasa module pytim.simple_interface module pytim.utilities module pytim.willard_chandler module

R

RDF (class in pytim.observables.rdf) RDF2D (class in pytim.observables.rdf2d) reset_labels() (pytim.gitim.GITIM method) (pytim.itim.ITIM method) (pytim.sasa.SASA method) (pytim.simple_interface.SimpleInterface method) (pytim.willard_chandler.WillardChandler method)

rmsd_ellipsoid() (pytim.observables.ContactAngle static method)

S

sample() (pytim.observables.ContactAngle method) (pytim.observables.Correlator method) sample_theta_R() (pytim.observables.ContactAngle method) SASA (class in pytim.sasa) SimpleInterface (class in pytim.simple_interface)

surface() (pytim.willard_chandler.Writevtk method) surface_cluster_cut (pytim.gitim.GITIM property) (pytim.itim.ITIM property) (pytim.sasa.SASA property) (pytim.simple_interface.SimpleInterface property) (pytim.willard_chandler.WillardChandler property)

V

Velocity (class in pytim.observables)

W

WillardChandler (class in pytim.willard_chandler) writecube() (pytim.willard_chandler.WillardChandler method) writeobj() (pytim.willard_chandler.WillardChandler method) writepdb() (pytim.gitim.GITIM method) (pytim.itim.ITIM method) (pytim.sasa.SASA method) (pytim.simple_interface.SimpleInterface method) (pytim.willard_chandler.WillardChandler method)

Writevtk (class in pytim.willard_chandler)